Index

A

above_ErrV_Thresh() (in module mufasa.clean_fits) adaptive_moment_maps() (in module mufasa.moment_guess) add_peakI() (mufasa.visualization.scatter_3D.ScatterPPV method) add_results() (mufasa.clean_fits.fit_results method) add_wcs_del() (mufasa.visualization.scatter_3D.ScatterPPV method)

adoptive_snr_masking (mufasa.spec_models.meta_model.MetaModel attribute) AIC() (in module mufasa.aic) AICc() (in module mufasa.aic) ammonia_multi_v() (in module mufasa.spec_models.ammonia_multiv) AmmoniaModel (class in mufasa.spec_models.SpecModels) assign_to_dataframe() (in module mufasa.utils.dataframe)

B

BaseModel (class in mufasa.spec_models.BaseModel)

C

calc_AICc() (in module mufasa.UltraCube) calc_AICc_likelihood() (in module mufasa.UltraCube) calc_chisq() (in module mufasa.UltraCube) calc_rss() (in module mufasa.UltraCube) calculate_dask_memory_limit() (in module mufasa.utils.memory) calculate_target_memory() (in module mufasa.utils.memory) central_win_hwidth (mufasa.spec_models.meta_model.MetaModel attribute)

clean_2comp_maps() (in module mufasa.clean_fits) convolve_cube() (mufasa.UltraCube.UltraCube method) convolve_sky() (in module mufasa.convolve_tools) convolve_sky_byfactor() (in module mufasa.convolve_tools) (in module mufasa.UltraCube) cubefit_gen() (in module mufasa.multi_v_fit) cubefit_simp() (in module mufasa.multi_v_fit)

D

deblend() (in module mufasa.deblend_cube) (mufasa.spec_models.HyperfineModel.HyperfineModel method) default_masking() (in module mufasa.multi_v_fit) deprecated() (in module mufasa.utils.decorators)

disk_neighbour() (in module mufasa.utils.neighbours) dist_divide() (in module mufasa.utils.map_divide) distance_metric() (in module mufasa.slab_sort) downsample_header() (in module mufasa.utils.fits_utils)

E

edge_trim() (in module mufasa.convolve_tools) ensure_units_compatible() (in module mufasa.visualization.spec_viz) eps (mufasa.spec_models.meta_model.MetaModel attribute) estimate_mode() (in module mufasa.signals)

exclusive_2comp_maps() (in module mufasa.clean_fits) expand_fits() (in module mufasa.master_fitter) expand_interpolate() (in module mufasa.utils.interpolate) expand_mask() (in module mufasa.UltraCube) extremeV_mask() (in module mufasa.clean_fits)

F

filter() (mufasa.utils.mufasa_log.OriginContextFilter method) (mufasa.utils.mufasa_log.WarningContextFilter method) fit_best_2comp_residual_cnv() (in module mufasa.master_fitter) fit_cube() (in module mufasa.UltraCube) (mufasa.UltraCube.UltraCube method) fit_results (class in mufasa.clean_fits) fit_surroundings() (in module mufasa.master_fitter)

fits_comp_AICc() (in module mufasa.aic) fits_comp_chisq() (in module mufasa.aic) fitter (mufasa.spec_models.meta_model.MetaModel attribute) fittype (mufasa.spec_models.meta_model.MetaModel attribute) FitTypeError footprint_rectangle() (in module mufasa.utils.neighbours) freq_dict (mufasa.spec_models.meta_model.MetaModel attribute)

G

get_2comp_wide_guesses() (in module mufasa.master_fitter) get_AICc() (mufasa.UltraCube.UltraCube method) get_AICc_likelihood() (mufasa.UltraCube.UltraCube method) get_all_lnk_maps() (in module mufasa.UltraCube) (mufasa.UltraCube.UltraCube method) get_best_2c_parcube() (in module mufasa.UltraCube) (mufasa.UltraCube.UltraCube method) get_best_2comp_model() (in module mufasa.master_fitter) get_best_2comp_residual() (in module mufasa.master_fitter) get_best_2comp_residual_cnv() (in module mufasa.master_fitter) get_best_2comp_residual_SpectralCube() (in module mufasa.master_fitter) get_best_2comp_snr_mod() (in module mufasa.master_fitter) get_best_residual() (mufasa.UltraCube.UltraCube method) get_celestial_hdr() (in module mufasa.convolve_tools) (in module mufasa.guess_refine) get_chisq() (in module mufasa.multi_v_fit) (in module mufasa.UltraCube) (mufasa.UltraCube.UltraCube method) get_cnv_cube() (mufasa.UltraCube.UltraCube method) get_comp_AICc() (in module mufasa.aic) get_convolved_cube() (in module mufasa.master_fitter) (mufasa.master_fitter.Region method) get_convolved_fits() (in module mufasa.master_fitter) (mufasa.master_fitter.Region method) get_cube_slab() (in module mufasa.visualization.spec_viz) get_fits() (in module mufasa.master_fitter) (mufasa.master_fitter.Region method) get_local_bad() (in module mufasa.master_fitter) get_logger() (in module mufasa.utils.mufasa_log) get_marginal_pix() (in module mufasa.master_fitter) get_masked_moment() (in module mufasa.UltraCube)

get_model_fit() (mufasa.UltraCube.UCubePlus method) get_moments() (in module mufasa.signals) get_neighbor_coord() (in module mufasa.utils.neighbours) get_pixel_mapping() (in module mufasa.utils.fits_utils) get_plotter() (mufasa.UltraCube.UltraCube method) get_reduced_chisq() (mufasa.UltraCube.UltraCube method) get_refit_guesses() (in module mufasa.master_fitter) get_residual() (in module mufasa.UltraCube) (mufasa.UltraCube.UltraCube method) get_rms() (in module mufasa.UltraCube) (mufasa.UltraCube.UltraCube method) get_rms_prefit() (in module mufasa.moment_guess) get_rms_robust() (in module mufasa.signals) get_rss() (in module mufasa.UltraCube) (mufasa.UltraCube.UltraCube method) get_signal_mask() (in module mufasa.signals) get_size_mb() (in module mufasa.utils.memory) get_skyheader() (in module mufasa.master_fitter) get_snr() (in module mufasa.signals) get_spec_grid() (in module mufasa.visualization.spec_viz) get_start_point() (in module mufasa.multi_v_fit) get_system_free_memory() (in module mufasa.utils.memory) get_tau() (in module mufasa.moment_guess) get_tex() (in module mufasa.moment_guess) get_Tpeak() (in module mufasa.UltraCube) (mufasa.UltraCube.UltraCube method) get_v_at_peak() (in module mufasa.signals) get_v_mask() (in module mufasa.signals) get_valid_neighbors() (in module mufasa.utils.neighbours) get_vstats() (in module mufasa.multi_v_fit) get_window_slab() (in module mufasa.moment_guess) guess_from_cnvpara() (in module mufasa.guess_refine)

H

handle_snr() (in module mufasa.multi_v_fit)

has_fit() (mufasa.UltraCube.UltraCube method) HyperfineModel (class in mufasa.spec_models.HyperfineModel)

I

include_model_mask() (mufasa.UltraCube.UltraCube method) init_logging() (in module mufasa.utils.mufasa_log)

is_K() (in module mufasa.UltraCube) iter_2comp_fit() (in module mufasa.master_fitter) iter_expand() (in module mufasa.utils.interpolate)

L

likelihood() (in module mufasa.aic) linename (mufasa.spec_models.meta_model.MetaModel attribute) linenames (mufasa.spec_models.meta_model.MetaModel attribute) LineSetup (class in mufasa.moment_guess) linetype (mufasa.spec_models.meta_model.MetaModel attribute)

load_cube() (mufasa.UltraCube.UltraCube method) load_fits() (mufasa.master_fitter.Region method) load_model_fit() (in module mufasa.UltraCube) (mufasa.UltraCube.UltraCube method) load_pcube() (mufasa.UltraCube.UltraCube method) log_progress() (mufasa.master_fitter.Region method)

M

main_hf_moments (mufasa.spec_models.meta_model.MetaModel attribute) make_dataframe() (in module mufasa.utils.dataframe) make_header() (in module mufasa.multi_v_fit) make_header2D() (mufasa.UltraCube.UltraCube method) mask_cleaning() (in module mufasa.guess_refine) mask_swap_2comp() (in module mufasa.guess_refine) (in module mufasa.slab_sort) master_2comp_fit() (in module mufasa.master_fitter) (mufasa.master_fitter.Region method) master_guess() (in module mufasa.moment_guess) master_mask() (in module mufasa.guess_refine) match_pcube_mask() (in module mufasa.multi_v_fit) maxref_neighbor_coords() (in module mufasa.utils.neighbours) MetaModel (class in mufasa.spec_models.meta_model) model_func (mufasa.spec_models.meta_model.MetaModel attribute) model_function() (mufasa.spec_models.meta_model.MetaModel method) module mufasa mufasa.aic mufasa.clean_fits mufasa.convolve_tools mufasa.deblend_cube mufasa.exceptions mufasa.guess_refine mufasa.master_fitter mufasa.moment_guess mufasa.multi_v_fit mufasa.signals mufasa.slab_sort mufasa.spec_models mufasa.spec_models.ammonia_multiv mufasa.spec_models.BaseModel mufasa.spec_models.HyperfineModel mufasa.spec_models.m_constants mufasa.spec_models.meta_model mufasa.spec_models.n2hp_constants mufasa.spec_models.n2hp_deblended mufasa.spec_models.n2hp_multiv mufasa.spec_models.nh3_deblended mufasa.spec_models.SpecModels mufasa.UltraCube mufasa.utils mufasa.utils.dataframe mufasa.utils.decorators mufasa.utils.fits_utils mufasa.utils.interpolate mufasa.utils.map_divide mufasa.utils.memory mufasa.utils.mufasa_log mufasa.utils.multicore mufasa.utils.neighbours mufasa.visualization mufasa.visualization.scatter_3D mufasa.visualization.spec_viz mom_guess_wide_sep() (in module mufasa.moment_guess) moment_guesses() (in module mufasa.moment_guess) moment_guesses_1c() (in module mufasa.moment_guess) monitor_peak_memory() (in module mufasa.utils.memory) mufasa module mufasa.aic module mufasa.clean_fits module mufasa.convolve_tools module mufasa.deblend_cube module

mufasa.exceptions module mufasa.guess_refine module mufasa.master_fitter module mufasa.moment_guess module mufasa.multi_v_fit module mufasa.signals module mufasa.slab_sort module mufasa.spec_models module mufasa.spec_models.ammonia_multiv module mufasa.spec_models.BaseModel module mufasa.spec_models.HyperfineModel module mufasa.spec_models.m_constants module mufasa.spec_models.meta_model module mufasa.spec_models.n2hp_constants module mufasa.spec_models.n2hp_deblended module mufasa.spec_models.n2hp_multiv module mufasa.spec_models.nh3_deblended module mufasa.spec_models.SpecModels module mufasa.UltraCube module mufasa.utils module mufasa.utils.dataframe module mufasa.utils.decorators module mufasa.utils.fits_utils module mufasa.utils.interpolate module mufasa.utils.map_divide module mufasa.utils.memory module mufasa.utils.mufasa_log module mufasa.utils.multicore module mufasa.utils.neighbours module mufasa.visualization module mufasa.visualization.scatter_3D module mufasa.visualization.spec_viz module multi_v_model_generator() (mufasa.spec_models.BaseModel.BaseModel method) multi_v_spectrum() (mufasa.spec_models.BaseModel.BaseModel method) (mufasa.spec_models.HyperfineModel.HyperfineModel method)

N

n2hp_multi_v() (in module mufasa.spec_models.n2hp_multiv) n2hp_multi_v_model_generator() (in module mufasa.spec_models.n2hp_multiv) n2hp_vtau_singlemodel_deblended() (in module mufasa.spec_models.n2hp_deblended) N2HplusModel (class in mufasa.spec_models.SpecModels)

ncomp (mufasa.spec_models.meta_model.MetaModel attribute) nh3_multi_v_model_generator() (in module mufasa.spec_models.ammonia_multiv) nh3_vtau_singlemodel_deblended() (in module mufasa.spec_models.nh3_deblended) noisemask_moment() (in module mufasa.moment_guess)

O

OriginContextFilter (class in mufasa.utils.mufasa_log)

P

peak_memory() (in module mufasa.utils.memory) peakT() (in module mufasa.moment_guess) (mufasa.spec_models.meta_model.MetaModel method) plot_fit() (mufasa.UltraCube.UltraCube method) (mufasa.visualization.spec_viz.Plotter method) plot_fits_grid() (in module mufasa.visualization.spec_viz) (mufasa.UltraCube.UltraCube method) (mufasa.visualization.spec_viz.Plotter method) plot_model() (in module mufasa.visualization.spec_viz)

plot_ppv() (mufasa.visualization.scatter_3D.ScatterPPV method) plot_ppv_scatter() (mufasa.master_fitter.Region method) plot_spec() (in module mufasa.visualization.spec_viz) (mufasa.UltraCube.UltraCube method) (mufasa.visualization.spec_viz.Plotter method) plot_spec_grid() (in module mufasa.visualization.spec_viz) (mufasa.UltraCube.UltraCube method) (mufasa.visualization.spec_viz.Plotter method) Plotter (class in mufasa.visualization.spec_viz)

Q

quick_2comp_sort() (in module mufasa.guess_refine) (in module mufasa.slab_sort)

R

read() (in module mufasa.utils.dataframe) read_best_fits() (mufasa.master_fitter.Region method) read_model_fit() (mufasa.UltraCube.UCubePlus method) refine_2c_guess() (in module mufasa.guess_refine) refine_each_comp() (in module mufasa.guess_refine) refine_guess() (in module mufasa.guess_refine) refine_rms() (in module mufasa.signals) refine_signal_mask() (in module mufasa.signals) refit_2comp_wide() (in module mufasa.master_fitter) refit_bad_2comp() (in module mufasa.master_fitter) refit_marginal() (in module mufasa.master_fitter) refit_swap_2comp() (in module mufasa.master_fitter) refmap_2c_mask() (in module mufasa.slab_sort)

Region (class in mufasa.master_fitter) register_pcube() (in module mufasa.multi_v_fit) regrid() (in module mufasa.convolve_tools) (in module mufasa.guess_refine) regrid_mask() (in module mufasa.convolve_tools) remove_zeros() (in module mufasa.clean_fits) replace_bad_pix() (in module mufasa.master_fitter) replace_para() (in module mufasa.master_fitter) replace_rss() (in module mufasa.master_fitter) reset_logger() (in module mufasa.utils.mufasa_log) reset_model_mask() (mufasa.UltraCube.UltraCube method) rest_value (mufasa.spec_models.meta_model.MetaModel attribute) retry_fit() (in module mufasa.multi_v_fit)

S

save_best_2comp_fit() (in module mufasa.master_fitter) save_fit() (in module mufasa.UltraCube) (mufasa.UltraCube.UltraCube method) save_guesses() (in module mufasa.guess_refine) (in module mufasa.multi_v_fit) save_map() (in module mufasa.master_fitter) save_pcube() (in module mufasa.multi_v_fit) save_updated_paramaps() (in module mufasa.master_fitter) scatter_3D() (in module mufasa.visualization.scatter_3D) scatter_3D_df() (in module mufasa.visualization.scatter_3D) ScatterPPV (class in mufasa.visualization.scatter_3D) set_meta_model() (mufasa.visualization.scatter_3D.ScatterPPV method)

set_pyspeckit_verbosity() (in module mufasa.multi_v_fit) sigmax (mufasa.spec_models.meta_model.MetaModel attribute) sigmin (mufasa.spec_models.meta_model.MetaModel attribute) simple_para_clean() (in module mufasa.guess_refine) snr_estimate() (in module mufasa.multi_v_fit) snr_mask() (in module mufasa.convolve_tools) SNRMaskError sort_2comp() (in module mufasa.slab_sort) square_neighbour() (in module mufasa.utils.neighbours) standard_2comp_fit() (in module mufasa.master_fitter) (mufasa.master_fitter.Region method) StartFitError strip_units() (in module mufasa.visualization.spec_viz)

T

T_antenna() (in module mufasa.spec_models.ammonia_multiv) (in module mufasa.spec_models.n2hp_multiv) (mufasa.spec_models.BaseModel.BaseModel static method) tau_wts (mufasa.spec_models.meta_model.MetaModel attribute) taumax (mufasa.spec_models.meta_model.MetaModel attribute) taumin (mufasa.spec_models.meta_model.MetaModel attribute)

tautex_renorm() (in module mufasa.guess_refine) Texmax (mufasa.spec_models.meta_model.MetaModel attribute) Texmin (mufasa.spec_models.meta_model.MetaModel attribute) tmp_save_gauge() (in module mufasa.utils.memory) to_K() (in module mufasa.UltraCube) trim_cube_edge() (in module mufasa.signals) trim_edge() (in module mufasa.signals)

U

UCubePlus (class in mufasa.UltraCube)

UltraCube (class in mufasa.UltraCube)

V

v_estimate() (in module mufasa.signals) validate_n_cores() (in module mufasa.utils.multicore) vmask_cube() (in module mufasa.moment_guess)

vmask_moments() (in module mufasa.moment_guess) voff_at_peak (mufasa.spec_models.meta_model.MetaModel attribute) voffs (mufasa.spec_models.meta_model.MetaModel attribute)

W

WarningContextFilter (class in mufasa.utils.mufasa_log) watershed_divide() (in module mufasa.utils.map_divide)

window_hwidth (mufasa.spec_models.meta_model.MetaModel attribute) window_mask_pcube() (in module mufasa.moment_guess) window_moments() (in module mufasa.moment_guess)